VIRmiRNA -A database of viral miRNA
VMR_0405 details

miRNA Id:VMR_0405
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-3-3p
miRNA Sequence: ucgcggucacagaaugugaca
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):52.38
pre-miRNA:kshv-mir-k12-3
pre-miRNA Sequence:ggcuaucacauucugaggacggcagcgacgugugucuaacgucaacgucgcggucacagaaugugacacc
Arm: 3p
Cell line: HEK293, BJAB cells
Method:Northern blot analysis, RT-PCR
Reference: 17500590
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed